TU Delft

Postdoc Bioinformatics: Modelling of Single-Cell Heterogeneity in Proton Therapy Response

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Convergence for Health and Technology

Work environment
Erasmus MC stands for a healthy population and excellence in healthcare. By conducting groundbreaking work, we aim to push boundaries through leading the way in research, education and healthcare. We have access to the latest equipment and techniques in a state-of-the-art environment.

Delft University of Technology is built on strong foundations. As creators of the world-famous Dutch waterworks and pioneers in biotech, TU Delft is a top international university combining science, engineering and design. It delivers world class results in education, research and innovation. For generations, our engineers have proven to be entrepreneurial problem-solvers both in business and in a social context. TU Delft offers 16 Bachelor’s and 32 Master’s programmes to more than 23,000 students. Our scientific staff consists of 3,500 staff members and 2,800 PhD candidates. Together we imagine, invent and create solutions using technology to have a positive impact on a global scale.

Challenge. Change. Impact!

Functie omschrijving

This postdoc position in computational biology is available within the Convergence project titled “Single-cell discovery of molecular mechanisms and biomarkers for targeted proton therapy”.
Proton therapy is thought to be safer and more effective than conventional radiation therapy, because a proton beam can be directed more precisely for less impact on surrounding tissues. The treatment is therefore indicated for tumors located near sensitive organs, such as the eye, brain, and central nervous system. The effects of proton therapy at the molecular level as well as the mechanisms driving resistance to this treatment remain poorly understood.
The Gonçalves lab at the TU Delft is looking for a self-motivated and independent postdoc to work in a flagship multidisciplinary project in collaboration with the Chien lab at the Erasmus Medical Center. The project aims to gain a better understanding of molecular mechanisms driving (single-cell) heterogeneity in response to proton therapy in cancer. This unique research opportunity is also made possible by the close proximity to one of the two proton therapy centers in the Netherlands: the HollandPTC in Delft.
The focus of this postdoc position at the TU Delft will be to design computational methods and build models to predict response and identify molecular and image biomarkers of single-cell response and resistance to treatment. The work will involve close collaboration with an experimental postdoc at Erasmus MC, who will use advanced imaging and single-cell sequencing technologies to characterize cell cultures derived from patient biopsies before and after therapy.

Functie eisen

The successful postdoc candidate should have a solid background in Computer Science or equivalent, with knowledge of algorithmics, statistical data analysis and modeling, and machine learning. Additionally, a PhD in bioinformatics or related, and substantial research experience with bioinformatics tools for processing and analysis of high-throughput molecular data is preferred. The position requires excellent command of the English language, both spoken and written. In addition, we are looking for creativity, critical thinking, rigour, independence, and good communication skills. The position is moderately applied, there is room for innovation and development of new ideas.

The candidate will work in a highly multidisciplinary environment, and interact with a diverse group of faculty in Computer Science, Pattern Recognition, Bioinformatics, Biomedical and Molecular Biology. The project will also enable collaboration with other leading laboratories at the Erasmus MC, the TU Delft, and the Oncode Institute.

Arbeidsvoorwaarden

The gross monthly salary ranges from € 3.389 to € 4.274 depending on your level of education and relevant experience and based on a full-time workweek. The terms of employment are in accordance with the Collective Labour Agreements of the participating institutes.

Informeren en solliciteren

For more information about this position and to apply please visit https://convergence.healthandtechnology.nl/square/position/37

Acquisitie naar aanleiding van deze vacature wordt niet op prijs gesteld.

Uren per week: 38-40 uur per week

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